Showing : limma contrast matrix • reset
3
votes
2
replies
1.3k
views
Creating a correct limma model with respect to contrast matrix and design matrix
limma limma contrast matrix limma design matrix
updated 6.4 years ago by ★ 28k • written 6.4 years ago by • 0
1
vote
4
replies
1.7k
views
Methylation EPIC annotation - the logFC values represented as boxplots
probe to gene id logFC illuminahumanmethylationepicanno.ilm10b2.hg19 limma contrast matrix
updated 6.8 years ago by 67k • written 6.8 years ago by • 0
4
votes
4
replies
8.7k
views
edgeR design matrix and contrasts: how to make contrast between groups that aren't shown in the design matrix columns?
edger design and contrast matrix contrast limma contrast matrix limma
updated 7.0 years ago by 52k • written 7.0 years ago by ▴ 20
5
votes
3
replies
2.5k
views
Correct contrast for testing multi-level interaction effect in limma using combined factors design matrix
limma contrast matrix limma design matrix limma rna-seq limma voom
updated 7.8 years ago by ★ 28k • written 7.8 years ago by • 0
2
votes
8
replies
5.8k
views
limma interaction contrasts
limma contrast matrix limma design matrix limma
updated 7.8 years ago by ★ 28k • written 7.8 years ago by ▴ 20
2
votes
15
replies
3.5k
views
limma: how to use pairing and adjust for covariates
limma limma-voom limma paired analysis limma contrast matrix
updated 7.8 years ago by ★ 28k • written 7.8 years ago by ▴ 10
1
vote
6
replies
3.8k
views
Multiple testing limma contrasts
limma limma voom limma contrast matrix multiple testing correction
updated 7.9 years ago by 67k • written 7.9 years ago by ▴ 10
3
votes
5
replies
2.3k
views
Limma-voom contrast confusion
limma limma voom limma design matrix limma contrast matrix limma paired analysis
updated 7.9 years ago by ★ 28k • written 7.9 years ago by ▴ 10
1
vote
5
replies
2.0k
views
Limma: paired multifactor analysis
limma limma design matrix limma contrast matrix limma paired analysis limma-voom
updated 7.9 years ago by 52k • written 7.9 years ago by ▴ 10
0
votes
2
replies
1.0k
views
Help with limma contrast/design matrices
limma contrast matrix
8.2 years ago mat149 ▴ 80
0
votes
4
replies
1.6k
views
contrast matrix design for a comparison (trend) of drug concentrations
limma contrast matrix affymetrix microarrays limma
updated 8.2 years ago by ★ 28k • written 8.2 years ago by ▴ 840
1
vote
2
replies
1.6k
views
Limma design matrix for three-treatment crossover study
limma design matrix limma limma contrast matrix crossover study
updated 8.2 years ago by ★ 28k • written 8.2 years ago by ▴ 10
7
votes
4
replies
3.6k
views
Limma contrast for variables disease, gender and age
limma design matrix limma limma contrast matrix microarrays
8.5 years ago miyuki_iii ▴ 10
4
votes
3
replies
3.7k
views
limma: model/contrast matrix for 2x3 factorial design
limma multifactorial design design and contrast matrix limma design matrix limma contrast matrix
updated 8.8 years ago by 52k • written 8.8 years ago by • 0
1
vote
5
replies
1.4k
views
Question about contrast matrix using limma
limma rna-seq limma contrast matrix
updated 8.8 years ago by 52k • written 8.8 years ago by • 0
2
votes
4
replies
9.4k
views
Limma design and contrast matrix
limma limma design matrix limma contrast matrix
8.8 years ago donny.dw • 0
16 results • Page 1 of 1
Recent ...
Replies
Comment: Problems with oarfish + tximport + swish by Michael Love 43k
Great thanks for posting the issue and sticking with it Annaleigh
Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0
Awesome possum! Update works!! Thank you so much for the help and guidance!
Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal by iqratechnology4 • 0
Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/
Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt? by James W. MacDonald 67k
> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…
Comment: Problems with oarfish + tximport + swish by Michael Love 43k
Let me see if I can add some code to tximeta to cover this case. I've added an argument `skipRanges` in devel branch which should allow: …
Votes
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Answer: Limma Interaction Effect with Covariates
Awards • All
Popular Question to Gordon Smyth 52k
Popular Question to Bob ▴ 10
Popular Question to shepherl 4.1k
Scholar to James W. MacDonald 67k
Popular Question to Assa Yeroslaviz ★ 1.5k
Locations • All
United States, 1 hour ago
United States, 2 hours ago
Hong Kong, 2 hours ago
WEHI, Melbourne, Australia, 4 hours ago
The city by the bay, 4 hours ago
Traffic: 462 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6